Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1414 domain-containing protein | DN590_08215 | Not Available | Positive | 1686583 - 1686810 | 8330.93 |
| duf3413 domain-containing protein | DN590_08220 | Not Available | Positive | 1686842 - 1688602 | 66919.2 |
| Trna-pro | Not Available | Not Available | Positive | 1688677 - 1688753 | Not Available |
| dna-binding response regulator | DN590_08230 | Not Available | Positive | 1688962 - 1689609 | 23533.5 |
| cytochrome c biogenesis protein ccmh | DN590_08235 | Not Available | Negative | 1689706 - 1690755 | 39094.3 |
| thiol:disulfide interchange protein dsbe | DN590_08240 | Not Available | Negative | 1690752 - 1691309 | 20778.0 |
| heme lyase ccmf/nrfe family subunit | DN590_08245 | Not Available | Negative | 1691306 - 1693261 | 71922.2 |
| cytochrome c maturation protein ccme | DN590_08250 | Not Available | Negative | 1693258 - 1693737 | 17945.6 |
| heme exporter protein ccmd | DN590_08255 | Not Available | Negative | 1693734 - 1693946 | 7787.63 |
| heme abc transporter permease | DN590_08260 | Not Available | Negative | 1693943 - 1694680 | 27846.0 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

