Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| microcin abc transporter permease | DN590_08160 | Not Available | Positive | 1676059 - 1677153 | 40405.6 |
| abc transporter permease | DN590_08165 | Not Available | Positive | 1677153 - 1678178 | 38128.7 |
| microcin c abc transporter atp-binding protein yejf | DN590_08170 | Not Available | Positive | 1678180 - 1679769 | 58527.6 |
| hypothetical protein | DN590_08175 | Not Available | Negative | 1679773 - 1680117 | 12554.9 |
| bcr/cfla family drug resistance efflux transporter | DN590_08185 | Not Available | Negative | 1680451 - 1681641 | 43389.5 |
| 16s rrna pseudouridine(516) synthase rsua | DN590_08190 | Not Available | Negative | 1681657 - 1682364 | 26605.5 |
| atp-dependent helicase | DN590_08195 | Not Available | Positive | 1682516 - 1684276 | 66506.9 |
| 50s ribosomal protein l25 | DN590_08200 | Not Available | Positive | 1684401 - 1684685 | 10464.8 |
| hypothetical protein | DN590_08205 | Not Available | Negative | 1684793 - 1685413 | 23790.1 |
| nucleoid-associated protein yejk | DN590_08210 | Not Available | Negative | 1685441 - 1686448 | 37824.6 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

