Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trimethylamine-n-oxide reductase tora | DN590_08105 | Not Available | Negative | 1661396 - 1663894 | 92738.0 |
| pentaheme c-type cytochrome torc | DN590_08110 | Not Available | Negative | 1663904 - 1665037 | 41814.5 |
| plp-dependent aminotransferase family protein | DN590_08115 | Not Available | Positive | 1665202 - 1666674 | 55022.4 |
| mannonate dehydratase | DN590_08120 | Not Available | Negative | 1666720 - 1667910 | 44736.1 |
| fructuronate reductase | DN590_08125 | Not Available | Positive | 1668113 - 1669579 | 54225.1 |
| hypothetical protein | DN590_08130 | Not Available | Positive | 1669699 - 1670685 | 35972.1 |
| phosphatase pap2 family protein | DN590_08135 | Not Available | Positive | 1670719 - 1671432 | 26578.6 |
| bifunctional murein dd-endopeptidase/murein ld-carboxypeptidase | DN590_08145 | Not Available | Positive | 1671846 - 1672415 | 21158.1 |
| cyclic di-gmp phosphodiesterase | DN590_08150 | Not Available | Positive | 1672584 - 1674143 | 58541.0 |
| abc transporter substrate-binding protein | DN590_08155 | Not Available | Positive | 1674244 - 1676058 | 69597.7 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

