Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amino acid racemase | DN590_08050 | Not Available | Positive | 1651556 - 1652275 | 26320.1 |
| anaerobic c4-dicarboxylate transporter | DN590_08055 | Not Available | Positive | 1652351 - 1653649 | 45085.9 |
| pts fructose transporter subunit iibc | DN590_08060 | Not Available | Negative | 1653755 - 1655443 | 57613.7 |
| 1-phosphofructokinase | DN590_08065 | Not Available | Negative | 1655460 - 1656398 | 33784.7 |
| bifunctional pts fructose transporter subunit iia/hpr protein | DN590_08070 | Not Available | Negative | 1656398 - 1657528 | 39725.3 |
| sugar efflux transporter setb | DN590_08075 | Not Available | Positive | 1657897 - 1659078 | 42597.5 |
| ykgj family cysteine cluster protein | DN590_08080 | Not Available | Negative | 1659075 - 1659329 | 8877.88 |
| elongation factor p-like protein yeip | DN590_08085 | Not Available | Positive | 1659487 - 1660059 | 21403.7 |
| hypothetical protein | DN590_08090 | Not Available | Negative | 1660331 - 1660525 | 6949.47 |
| molecular chaperone tord | DN590_08100 | Not Available | Negative | 1660774 - 1661406 | 24265.9 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

