Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mfs transporter | DN590_08000 | Not Available | Positive | 1641704 - 1643026 | 48577.3 |
| ligand-gated channel protein | DN590_08005 | Not Available | Positive | 1643362 - 1645347 | 73097.7 |
| amino acid permease | DN590_08010 | Not Available | Negative | 1645420 - 1646889 | 53676.1 |
| hypothetical protein | DN590_08015 | Not Available | Negative | 1646873 - 1647061 | 7443.97 |
| lysr family transcriptional regulator | DN590_08020 | Not Available | Negative | 1647083 - 1647964 | 32610.4 |
| hypothetical protein | DN590_08025 | Not Available | Negative | 1647988 - 1648194 | 7791.41 |
| yeih family putative sulfate export transporter | DN590_08030 | Not Available | Positive | 1648280 - 1649329 | 36792.4 |
| deoxyribonuclease iv | DN590_08035 | Not Available | Positive | 1649401 - 1650258 | 31518.4 |
| hth-type transcriptional regulator | DN590_08040 | Not Available | Negative | 1650291 - 1651202 | 34527.7 |
| hypothetical protein | DN590_08045 | Not Available | Negative | 1651246 - 1651458 | 8246.24 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

