Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| faa hydrolase family protein | DN590_07900 | Not Available | Negative | 1623142 - 1623843 | 25971.9 |
| gentisate 1,2-dioxygenase | DN590_07905 | Not Available | Negative | 1623859 - 1624896 | 39195.3 |
| mfs transporter | DN590_07910 | Not Available | Negative | 1624908 - 1626266 | 48269.3 |
| lysr family transcriptional regulator | DN590_07915 | Not Available | Positive | 1626393 - 1627301 | 33601.1 |
| hypothetical protein | DN590_07920 | Not Available | Positive | 1627433 - 1627837 | 14870.1 |
| cidb/lrgb family autolysis modulator | DN590_07925 | Not Available | Positive | 1627834 - 1628529 | 24383.0 |
| cytidine deaminase | DN590_07930 | Not Available | Positive | 1628678 - 1629562 | 31717.9 |
| outer membrane permeability protein sana | DN590_07935 | Not Available | Positive | 1629726 - 1630445 | 27339.4 |
| duf2542 domain-containing protein | DN590_07940 | Not Available | Positive | 1630448 - 1630687 | 8917.37 |
| galactose/methyl galactoside abc transporter permease mglc | DN590_07945 | Not Available | Negative | 1630739 - 1631749 | 35620.4 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

