Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| beta-glucosidase bglx | DN590_07845 | Not Available | Negative | 1610770 - 1613067 | 83415.6 |
| d-lactate dehydrogenase | DN590_07850 | Not Available | Positive | 1613300 - 1615009 | 64211.4 |
| d-alanyl-d-alanine endopeptidase | DN590_07855 | Not Available | Negative | 1615111 - 1616058 | 34281.8 |
| yip1 family protein | DN590_07865 | Not Available | Negative | 1616239 - 1616826 | 21589.9 |
| deda family protein | DN590_07870 | Not Available | Positive | 1617067 - 1617636 | 21142.7 |
| multidrug resistance outer membrane protein mdtq | DN590_07875 | Not Available | Negative | 1617674 - 1619113 | 52217.5 |
| sam-dependent methyltransferase | DN590_07880 | Not Available | Positive | 1619283 - 1620017 | 27508.7 |
| trna dihydrouridine(16) synthase dusc | DN590_07885 | Not Available | Negative | 1620275 - 1621219 | 35026.2 |
| 3-hydroxybenzoate 6-monooxygenase | DN590_07890 | Not Available | Negative | 1621281 - 1622474 | 44055.5 |
| maleylacetoacetate isomerase | DN590_07895 | Not Available | Negative | 1622489 - 1623133 | 23953.8 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

