Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DN590_07795 | Not Available | Positive | 1602266 - 1602724 | 16575.7 |
| duf1456 family protein | DN590_07800 | Not Available | Negative | 1602768 - 1603238 | 17901.7 |
| two-component system response regulator yeht | DN590_07805 | Not Available | Negative | 1603285 - 1604004 | 27383.4 |
| sensor histidine kinase | DN590_07810 | Not Available | Negative | 1604001 - 1605686 | 62061.2 |
| hth-type transcriptional regulator mlra | DN590_07815 | Not Available | Positive | 1605912 - 1606643 | 28126.0 |
| hypothetical protein | DN590_07820 | Not Available | Positive | 1606695 - 1606802 | 3527.66 |
| abc transporter permease | DN590_07825 | Not Available | Negative | 1606783 - 1607514 | 25193.8 |
| abc transporter atp-binding protein | DN590_07830 | Not Available | Negative | 1607498 - 1608445 | 34957.4 |
| abc transporter permease | DN590_07835 | Not Available | Negative | 1608438 - 1609604 | 41067.0 |
| abc transporter substrate-binding protein | DN590_07840 | Not Available | Negative | 1609620 - 1610537 | 32485.9 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

