Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| oxo-acid lyase | DN590_07590 | Not Available | Positive | 1562274 - 1563014 | 26150.3 |
| transcription antiterminator bglg | DN590_07595 | Not Available | Positive | 1563036 - 1564949 | 72864.0 |
| type ii toxin-antitoxin system antitoxin, relb/dinj family | DN590_07600 | Not Available | Positive | 1565027 - 1565269 | 8945.86 |
| type ii toxin-antitoxin system rele/pare family toxin | DN590_07605 | Not Available | Positive | 1565259 - 1565543 | 10919.3 |
| anaerobic ribonucleoside-triphosphate reductase-activating protein | DN590_07610 | Not Available | Negative | 1565547 - 1566011 | 17451.9 |
| anaerobic ribonucleoside-triphosphate reductase | DN590_07615 | Not Available | Negative | 1566132 - 1568270 | 80167.1 |
| alpha,alpha-phosphotrehalase | DN590_07620 | Not Available | Negative | 1568679 - 1570331 | 63684.2 |
| pts trehalose transporter subunit iibc | DN590_07625 | Not Available | Negative | 1570381 - 1571799 | 51041.9 |
| hth-type transcriptional regulator trer | DN590_07630 | Not Available | Negative | 1571957 - 1572904 | 34895.1 |
| hypothetical protein | DN590_07635 | Not Available | Positive | 1572916 - 1573149 | 9207.04 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

