Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DN590_07490 | Not Available | Negative | 1541957 - 1543966 | 74618.7 |
| ynce family protein | DN590_07495 | Not Available | Negative | 1544051 - 1545121 | 39675.6 |
| inorganic diphosphatase | DN590_07500 | Not Available | Negative | 1545321 - 1545848 | 19539.3 |
| sugar abc transporter substrate-binding protein | DN590_07505 | Not Available | Positive | 1546158 - 1547114 | 34258.5 |
| sugar abc transporter atp-binding protein | DN590_07510 | Not Available | Positive | 1547218 - 1548720 | 55121.4 |
| abc transporter permease | DN590_07515 | Not Available | Positive | 1548731 - 1549756 | 35619.2 |
| sugar abc transporter permease yjff | DN590_07520 | Not Available | Positive | 1549743 - 1550744 | 35155.2 |
| methyl-accepting chemotaxis protein | DN590_07525 | Not Available | Positive | 1550848 - 1551960 | 39758.7 |
| class 1 fructose-bisphosphatase | DN590_07530 | Not Available | Negative | 1552037 - 1553035 | 36731.8 |
| udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl- meso-diaminopimelate ligase | DN590_07535 | Not Available | Positive | 1553211 - 1554587 | 50001.1 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

