Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carboxypeptidase/penicillin-binding protein 1a | DN590_06720 | Not Available | Negative | 1392421 - 1394997 | 94077.1 |
| dna utilization protein hofm | DN590_06725 | Not Available | Positive | 1395094 - 1395876 | 29116.0 |
| dna utilization protein hofn | DN590_06730 | Not Available | Positive | 1395873 - 1396412 | 20926.2 |
| hypothetical protein | DN590_06735 | Not Available | Positive | 1396396 - 1396851 | 17231.1 |
| duf2531 domain-containing protein | DN590_06740 | Not Available | Positive | 1396841 - 1397251 | 15350.2 |
| dna transporter hofq | DN590_06745 | Not Available | Positive | 1397157 - 1398404 | 45121.3 |
| shikimate kinase | DN590_06750 | Not Available | Positive | 1398809 - 1399330 | 19489.1 |
| 3-dehydroquinate synthase | DN590_06755 | Not Available | Positive | 1399388 - 1400476 | 38959.3 |
| cell division protein damx | DN590_06760 | Not Available | Positive | 1400573 - 1401877 | 46462.6 |
| adenine-specific dna-methyltransferase | DN590_06765 | Not Available | Positive | 1401995 - 1402831 | 32168.2 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

