Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gamma-glutamyltransferase | DN590_06505 | Not Available | Positive | 1337374 - 1339116 | 61582.5 |
| hypothetical protein | DN590_06510 | Not Available | Negative | 1339164 - 1340048 | 32889.5 |
| n-acetyltransferase | DN590_06515 | Not Available | Negative | 1340095 - 1340583 | 18625.4 |
| oxidoreductase | DN590_06520 | Not Available | Positive | 1341014 - 1342051 | 38746.9 |
| pirin family protein | DN590_06525 | Not Available | Positive | 1342175 - 1342870 | 26220.7 |
| hth-type transcriptional regulator gntr | DN590_06530 | Not Available | Positive | 1343000 - 1343995 | 36476.3 |
| gluconokinase | DN590_06535 | Not Available | Positive | 1344137 - 1344667 | 19459.2 |
| gluconate transporter | DN590_06540 | Not Available | Positive | 1344667 - 1346007 | 46433.0 |
| marc family transporter | DN590_06555 | Not Available | Negative | 1346996 - 1347589 | 21581.0 |
| aspartate-semialdehyde dehydrogenase | DN590_06560 | Not Available | Positive | 1347780 - 1348886 | 40006.2 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

