Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1145 family protein | DN590_06405 | Not Available | Negative | 1318539 - 1318814 | 10617.9 |
| 16s rrna (guanine(966)-n(2))-methyltransferase | DN590_06410 | Not Available | Negative | 1318804 - 1319400 | 21894.1 |
| signal recognition particle-docking protein ftsy | DN590_06415 | Not Available | Positive | 1319552 - 1321078 | 55932.9 |
| cell division atp-binding protein ftse | DN590_06420 | Not Available | Positive | 1321081 - 1321749 | 24371.7 |
| cell division protein ftsx | DN590_06425 | Not Available | Positive | 1321742 - 1322800 | 38580.0 |
| rna polymerase sigma factor rpoh | DN590_06430 | Not Available | Positive | 1323071 - 1323925 | 32515.7 |
| branched-chain amino acid abc transporter substrate-binding protein | DN590_06435 | Not Available | Positive | 1324231 - 1325349 | 39680.4 |
| aspartate 1-decarboxylase autocleavage activator panm | DN590_06440 | Not Available | Negative | 1325544 - 1325927 | 14480.1 |
| high-affinity branched-chain amino acid abc transporter substrate-binding protein livk | DN590_06445 | Not Available | Positive | 1326351 - 1327460 | 39534.3 |
| high-affinity branched-chain amino acid abc transporter permease livh | DN590_06450 | Not Available | Positive | 1327522 - 1328448 | 32939.3 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

