Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sulfurtransferase | DN590_06045 | Not Available | Positive | 1251381 - 1252688 | 48053.6 |
| cdp-alcohol phosphatidyltransferase family protein | DN590_06050 | Not Available | Negative | 1252789 - 1253412 | 22558.9 |
| carboxymuconolactone decarboxylase family protein | DN590_06055 | Not Available | Negative | 1253405 - 1253974 | 21247.9 |
| pyrimidine (deoxy)nucleoside triphosphate diphosphatase | DN590_06060 | Not Available | Positive | 1254054 - 1254467 | 15305.4 |
| duf1496 domain-containing protein | DN590_06065 | Not Available | Negative | 1254427 - 1254702 | 10071.2 |
| nadp-specific glutamate dehydrogenase | DN590_06070 | Not Available | Positive | 1254940 - 1256283 | 48521.3 |
| dna topoisomerase iii | DN590_06075 | Not Available | Negative | 1256364 - 1258310 | 72882.3 |
| selenide, water dikinase seld | DN590_06080 | Not Available | Negative | 1258315 - 1259358 | 36460.1 |
| hypothetical protein | DN590_06085 | Not Available | Negative | 1259300 - 1259509 | 7967.6 |
| nad(p)h nitroreductase | DN590_06090 | Not Available | Negative | 1259475 - 1260026 | 19986.1 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

