Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arginine n-succinyltransferase | DN590_05990 | Not Available | Negative | 1242861 - 1243895 | 38474.0 |
| aspartate aminotransferase family protein | DN590_05995 | Not Available | Negative | 1243892 - 1245112 | 43542.1 |
| hypothetical protein | DN590_06005 | Not Available | Negative | 1245242 - 1245469 | 8951.92 |
| exodeoxyribonuclease iii | DN590_06010 | Not Available | Positive | 1245557 - 1246363 | 30910.7 |
| hypothetical protein | DN590_06015 | Not Available | Negative | 1246449 - 1246655 | 7794.12 |
| tvp38/tmem64 family protein | DN590_06020 | Not Available | Positive | 1246683 - 1247243 | 20022.0 |
| tvp38/tmem64 family protein | DN590_06025 | Not Available | Positive | 1247240 - 1247950 | 25949.2 |
| abc transporter substrate-binding protein | DN590_06030 | Not Available | Positive | 1247983 - 1249152 | 42856.9 |
| thiamine abc transporter permease | DN590_06035 | Not Available | Positive | 1249125 - 1250660 | 55621.8 |
| sulfate abc transporter atp-binding protein | DN590_06040 | Not Available | Positive | 1250660 - 1251292 | 23226.0 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

