Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phenylalanine--trna ligase subunit alpha | DN590_05830 | Not Available | Negative | 1213808 - 1214791 | 36961.0 |
| 50s ribosomal protein l20 | DN590_05840 | Not Available | Negative | 1215161 - 1215517 | 13455.7 |
| 50s ribosomal protein l35 | DN590_05845 | Not Available | Negative | 1215573 - 1215770 | 7221.25 |
| translation initiation factor if-3 | DN590_05850 | Not Available | Negative | 1215867 - 1216409 | 20438.0 |
| threonine--trna ligase | DN590_05855 | Not Available | Negative | 1216413 - 1218341 | 74074.5 |
| hypothetical protein | DN590_05860 | Not Available | Positive | 1218646 - 1218753 | 4131.51 |
| hypothetical protein | DN590_05865 | Not Available | Negative | 1218918 - 1219676 | 27703.8 |
| 6-phosphofructokinase ii | DN590_05870 | Not Available | Positive | 1219964 - 1220893 | 32549.0 |
| fructosamine kinase family protein | DN590_05875 | Not Available | Positive | 1221162 - 1222022 | 32432.3 |
| hypothetical protein | DN590_05880 | Not Available | Negative | 1222087 - 1222623 | 20414.5 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

