Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hemin abc transporter substrate-binding protein | DN590_05775 | Not Available | Positive | 1202977 - 1203798 | 28841.0 |
| iron abc transporter permease | DN590_05780 | Not Available | Positive | 1203798 - 1204790 | 35052.4 |
| ydiu family protein | DN590_05790 | Not Available | Negative | 1205560 - 1207002 | 54841.6 |
| eal domain-containing protein | DN590_05795 | Not Available | Negative | 1207064 - 1207777 | 26445.1 |
| endopeptidase | DN590_05800 | Not Available | Negative | 1208096 - 1208560 | 17332.7 |
| vitamin b12 abc transporter atp-binding protein btud | DN590_05805 | Not Available | Negative | 1208638 - 1209387 | 27128.0 |
| glutathione peroxidase | DN590_05810 | Not Available | Negative | 1209387 - 1209938 | 20363.2 |
| vitamin b12 abc transporter permease btuc | DN590_05815 | Not Available | Negative | 1209999 - 1210979 | 34920.3 |
| integration host factor subunit alpha | DN590_05820 | Not Available | Negative | 1211101 - 1211400 | 11382.6 |
| phenylalanine--trna ligase subunit beta | DN590_05825 | Not Available | Negative | 1211405 - 1213792 | 87098.8 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

