Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| electron transfer flavoprotein subunit alpha | DN590_05725 | Not Available | Positive | 1190412 - 1191347 | 33651.9 |
| fad-dependent oxidoreductase | DN590_05730 | Not Available | Positive | 1191405 - 1192694 | 45917.7 |
| ferredoxin family protein | DN590_05735 | Not Available | Positive | 1192691 - 1192984 | 10814.7 |
| cyclohexanecarboxylate-coa ligase | DN590_05740 | Not Available | Positive | 1193067 - 1194704 | 60263.0 |
| phosphoenolpyruvate synthase | DN590_05745 | Not Available | Negative | 1194772 - 1197150 | 87166.9 |
| kinase/pyrophosphorylase | DN590_05750 | Not Available | Positive | 1197479 - 1198312 | 31228.7 |
| 3-deoxy-7-phosphoheptulonate synthase aroh | DN590_05755 | Not Available | Positive | 1198439 - 1199485 | 38669.2 |
| hemin uptake protein hemp | DN590_05760 | Not Available | Positive | 1199656 - 1199844 | 6900.28 |
| tonb-dependent receptor | DN590_05765 | Not Available | Positive | 1199919 - 1201901 | 72200.7 |
| hemin-degrading factor | DN590_05770 | Not Available | Positive | 1201949 - 1202980 | 38448.6 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

