Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ai-2e family transporter ydik | DN590_05670 | Not Available | Positive | 1178916 - 1180025 | 39714.5 |
| duf1870 domain-containing protein | DN590_05680 | Not Available | Positive | 1180474 - 1180830 | 14013.8 |
| mfs transporter | DN590_05685 | Not Available | Positive | 1180879 - 1182099 | 44546.5 |
| mfs transporter | DN590_05690 | Not Available | Positive | 1182340 - 1183575 | 44754.4 |
| quinate/shikimate dehydrogenase | DN590_05695 | Not Available | Positive | 1183597 - 1184463 | 31291.8 |
| type i 3-dehydroquinate dehydratase | DN590_05700 | Not Available | Positive | 1184500 - 1185258 | 27547.5 |
| acetate coa-transferase ydif | DN590_05705 | Not Available | Positive | 1185414 - 1187009 | 57321.1 |
| acyl-coa dehydrogenase | DN590_05710 | Not Available | Positive | 1187023 - 1188174 | 42974.5 |
| arac family transcriptional regulator | DN590_05715 | Not Available | Negative | 1188229 - 1189119 | 34306.7 |
| electron transfer flavoprotein | DN590_05720 | Not Available | Positive | 1189626 - 1190390 | 27552.1 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

