Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2593 family protein | DN590_05410 | Not Available | Positive | 1120152 - 1120640 | 18521.2 |
| 23s rrna (uracil(747)-c(5))-methyltransferase rlmc | DN590_05415 | Not Available | Positive | 1120682 - 1121809 | 42113.2 |
| Trna-ser | Not Available | Not Available | Positive | 1122142 - 1122229 | Not Available |
| isochorismatase family protein | DN590_05425 | Not Available | Negative | 1122380 - 1123057 | 24083.9 |
| pirin family protein | DN590_05430 | Not Available | Negative | 1123074 - 1123934 | 31046.7 |
| lysr family transcriptional regulator | DN590_05435 | Not Available | Positive | 1124043 - 1124954 | 33820.2 |
| translation initiation factor if-1 | DN590_05440 | Not Available | Negative | 1125034 - 1125252 | 8236.07 |
| leucyl/phenylalanyl-trna--protein transferase | DN590_05450 | Not Available | Negative | 1125538 - 1126242 | 26658.9 |
| cysteine/glutathione abc transporter atp-binding protein/permease cydc | DN590_05455 | Not Available | Negative | 1126287 - 1128008 | 62662.8 |
| cysteine/glutathione abc transporter permease/atp-binding protein cydd | DN590_05460 | Not Available | Negative | 1128009 - 1129775 | 65040.1 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

