Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DN590_05360 | Not Available | Positive | 1112093 - 1112473 | 14212.0 |
| glutaredoxin, grxa family | DN590_05365 | Not Available | Negative | 1112508 - 1112771 | 9850.75 |
| duf1418 family protein | DN590_05370 | Not Available | Positive | 1112944 - 1113234 | 10380.2 |
| oxygen-insensitive nadph nitroreductase | DN590_05375 | Not Available | Positive | 1113218 - 1113940 | 26732.0 |
| 30s ribosomal protein s6--l-glutamate ligase | DN590_05380 | Not Available | Positive | 1114000 - 1114902 | 32537.7 |
| ybjn domain-containing protein | DN590_05385 | Not Available | Positive | 1114993 - 1115469 | 17503.9 |
| spermidine/putrescine abc transporter substrate-binding protein potf | DN590_05390 | Not Available | Positive | 1115903 - 1117015 | 40799.7 |
| putrescine abc transporter atp-binding subunit potg | DN590_05395 | Not Available | Positive | 1117154 - 1118287 | 42120.5 |
| putrescine abc transporter permease poth | DN590_05400 | Not Available | Positive | 1118297 - 1119250 | 35582.7 |
| putrescine abc transporter permease poti | DN590_05405 | Not Available | Positive | 1119247 - 1120092 | 30620.5 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

