Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| malate/lactate/ureidoglycolate dehydrogenase | DN590_05105 | Not Available | Positive | 1056315 - 1057400 | 38866.6 |
| duf1471 domain-containing protein | DN590_05110 | Not Available | Negative | 1057498 - 1057758 | 8656.41 |
| dksa/trar family c4-type zinc finger protein | DN590_05115 | Not Available | Negative | 1058059 - 1058325 | 9700.06 |
| fe2+-dependent dioxygenase | DN590_05120 | Not Available | Negative | 1058401 - 1059078 | 25114.6 |
| catecholate siderophore receptor fiu | DN590_05125 | Not Available | Negative | 1059122 - 1061407 | 82050.6 |
| duf1471 domain-containing protein | DN590_05130 | Not Available | Negative | 1061702 - 1061962 | 8810.52 |
| 23s rrna (adenine(1618)-n(6))-methyltransferase rlmf | DN590_05135 | Not Available | Positive | 1062173 - 1063099 | 34138.6 |
| mechanosensitive channel protein | DN590_05140 | Not Available | Negative | 1063096 - 1065333 | 82459.3 |
| glutamine abc transporter atp-binding protein glnq | DN590_05145 | Not Available | Negative | 1065452 - 1066174 | 26749.5 |
| glutamine abc transporter permease glnp | DN590_05150 | Not Available | Negative | 1066171 - 1066830 | 24143.5 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

