Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | DN590_05055 | Not Available | Negative | 1042921 - 1044054 | 42200.5 |
| abc transporter atp-binding protein | DN590_05060 | Not Available | Negative | 1044047 - 1045783 | 62941.2 |
| secretion protein hlyd | DN590_05065 | Not Available | Negative | 1045776 - 1046771 | 36243.8 |
| transcriptional regulator | DN590_05070 | Not Available | Negative | 1046768 - 1047445 | 25045.0 |
| atp-dependent rna helicase rhle | DN590_05075 | Not Available | Positive | 1047667 - 1049013 | 49223.4 |
| gntr family transcriptional regulator | DN590_05080 | Not Available | Negative | 1049082 - 1049816 | 27341.9 |
| adenylosuccinate lyase family protein | DN590_05085 | Not Available | Positive | 1050019 - 1051371 | 49108.4 |
| 2-oxoglutarate translocator | DN590_05090 | Not Available | Positive | 1051405 - 1052826 | 50078.4 |
| atp-dependent dna helicase ding | DN590_05095 | Not Available | Positive | 1053004 - 1055154 | 81309.6 |
| dna-binding protein ybib | DN590_05100 | Not Available | Positive | 1055184 - 1056152 | 35142.8 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

