Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| adenosylmethionine--8-amino-7-oxononanoate transaminase | DN590_04950 | Not Available | Negative | 1024719 - 1026008 | 47061.9 |
| biotin synthase | DN590_04955 | Not Available | Positive | 1026085 - 1027125 | 38658.1 |
| 8-amino-7-oxononanoate synthase | DN590_04960 | Not Available | Positive | 1027122 - 1028279 | 41721.7 |
| malonyl-acp o-methyltransferase bioc | DN590_04965 | Not Available | Positive | 1028263 - 1029018 | 28098.4 |
| atp-dependent dethiobiotin synthetase biod | DN590_04970 | Not Available | Positive | 1029011 - 1029709 | 24593.5 |
| abc transporter atp-binding protein | DN590_04975 | Not Available | Negative | 1029675 - 1030397 | 26797.6 |
| excinuclease abc subunit b | DN590_04985 | Not Available | Positive | 1031166 - 1033187 | 76092.2 |
| hypothetical protein | DN590_04990 | Not Available | Negative | 1033342 - 1034250 | 32479.6 |
| hypothetical protein | DN590_04995 | Not Available | Negative | 1034311 - 1034496 | 7056.84 |
| gtp 3',8-cyclase moaa | DN590_05000 | Not Available | Positive | 1034713 - 1035702 | 36949.1 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

