Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4-oxalomesaconate tautomerase | DN590_04900 | Not Available | Positive | 1011274 - 1012326 | 37191.7 |
| anion permease | DN590_04905 | Not Available | Positive | 1012406 - 1013839 | 51394.9 |
| hydratase | DN590_04910 | Not Available | Positive | 1013908 - 1016172 | 81746.2 |
| putative acyl-coa thioester hydrolase | DN590_04915 | Not Available | Negative | 1016268 - 1017551 | 46131.1 |
| imidazolonepropionase | DN590_04920 | Not Available | Positive | 1017776 - 1018999 | 44721.5 |
| formimidoylglutamase | DN590_04925 | Not Available | Positive | 1018996 - 1019937 | 34269.8 |
| histidine utilization repressor | DN590_04930 | Not Available | Positive | 1020025 - 1020744 | 26933.2 |
| urocanate hydratase | DN590_04935 | Not Available | Positive | 1020882 - 1022567 | 61490.0 |
| histidine ammonia-lyase | DN590_04940 | Not Available | Positive | 1022569 - 1024089 | 53959.1 |
| kinase inhibitor | DN590_04945 | Not Available | Negative | 1024185 - 1024661 | 16996.9 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

