Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| eal domain-containing protein | DN590_04540 | Not Available | Positive | 934903 - 937095 | 82058.9 |
| amino acid abc transporter substrate-binding protein | DN590_04545 | Not Available | Positive | 937088 - 938020 | 34572.6 |
| abc transporter substrate-binding protein | DN590_04550 | Not Available | Positive | 938004 - 938897 | 33573.2 |
| hypothetical protein | DN590_04555 | Not Available | Positive | 938894 - 939592 | 27126.7 |
| eal domain-containing protein | DN590_04560 | Not Available | Positive | 939602 - 941536 | 71523.8 |
| hypothetical protein | DN590_04565 | Not Available | Negative | 941614 - 941889 | 9961.04 |
| hypothetical protein | DN590_04570 | Not Available | Negative | 941952 - 952406 | 366468.0 |
| channel protein tolc | DN590_04575 | Not Available | Positive | 952739 - 954082 | 49974.0 |
| type i secretion system permease/atpase | DN590_04580 | Not Available | Positive | 954160 - 956364 | 80381.4 |
| hlyd family type i secretion periplasmic adaptor subunit | DN590_04585 | Not Available | Positive | 956351 - 957724 | 51109.6 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

