Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypc/hybg/hupf family hydrogenase formation chaperone | DN590_04440 | Not Available | Positive | 910949 - 911221 | 9783.68 |
| hydrogenase formation protein hypd | DN590_04445 | Not Available | Positive | 911222 - 912343 | 41430.8 |
| hydrogenase expression/formation protein hype | DN590_04450 | Not Available | Positive | 912340 - 913350 | 35070.5 |
| formate hydrogenlyase transcriptional activator flha | DN590_04455 | Not Available | Positive | 913569 - 915647 | 78227.3 |
| nitrous oxide-stimulated promoter family protein | DN590_04460 | Not Available | Negative | 915742 - 916086 | 13557.7 |
| metal abc transporter substrate-binding protein | DN590_04465 | Not Available | Positive | 916274 - 917191 | 33447.7 |
| manganese/iron abc transporter atp-binding protein | DN590_04470 | Not Available | Positive | 917188 - 918003 | 29803.9 |
| metal abc transporter permease | DN590_04475 | Not Available | Positive | 918006 - 918863 | 30871.8 |
| metal abc transporter permease | DN590_04480 | Not Available | Positive | 918860 - 919711 | 30726.9 |
| cysteine hydrolase | DN590_04485 | Not Available | Positive | 919875 - 920597 | 26801.1 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

