Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| formate hydrogenlyase maturation protein hych | DN590_04390 | Not Available | Negative | 901997 - 902407 | 15608.6 |
| nadh-quinone oxidoreductase subunit nuob | DN590_04395 | Not Available | Negative | 902404 - 903171 | 28040.8 |
| formate hydrogenlyase complex iron-sulfur subunit | DN590_04400 | Not Available | Negative | 903171 - 903713 | 20406.5 |
| hydrogenase large subunit | DN590_04405 | Not Available | Negative | 903723 - 905432 | 64955.2 |
| hydrogenase 3 membrane subunit | DN590_04410 | Not Available | Negative | 905450 - 906373 | 33026.4 |
| formate hydrogenlyase subunit 3 | DN590_04415 | Not Available | Negative | 906376 - 908202 | 63801.6 |
| 4fe-4s dicluster domain-containing protein | DN590_04420 | Not Available | Negative | 908199 - 908810 | 21806.3 |
| formate hydrogenlyase regulator hyca | DN590_04425 | Not Available | Negative | 908954 - 909412 | 17608.7 |
| hydrogenase maturation nickel metallochaperone hypa | DN590_04430 | Not Available | Positive | 909611 - 909982 | 13844.6 |
| hydrogenase nickel incorporation protein hypb | DN590_04435 | Not Available | Positive | 910086 - 910958 | 31376.4 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

