Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| proline/glycine betaine abc transporter substrate-binding protein prox | DN590_04185 | Not Available | Positive | 863924 - 864919 | 36274.1 |
| mfs transporter | DN590_04190 | Not Available | Positive | 865110 - 866294 | 41671.1 |
| branched-chain amino acid abc transporter permease | DN590_04195 | Not Available | Positive | 866417 - 867154 | 26101.0 |
| l-valine transporter subunit ygah | DN590_04200 | Not Available | Positive | 867144 - 867479 | 11971.3 |
| transcriptional repressor mpra | DN590_04205 | Not Available | Positive | 867570 - 868100 | 20527.6 |
| multidrug export protein emra | DN590_04210 | Not Available | Positive | 868230 - 869402 | 42557.1 |
| multidrug efflux mfs transporter subunit emrb | DN590_04215 | Not Available | Positive | 869419 - 870957 | 55860.0 |
| porin | DN590_04220 | Not Available | Negative | 871006 - 872376 | 51469.6 |
| s-ribosylhomocysteine lyase | DN590_04225 | Not Available | Negative | 872722 - 873237 | 19340.3 |
| glutamate--cysteine ligase | DN590_04230 | Not Available | Negative | 873387 - 874943 | 58345.7 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

