Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding protein stpa | DN590_04125 | Not Available | Negative | 853332 - 853733 | 15170.3 |
| l-alanine exporter alae | DN590_04130 | Not Available | Positive | 854291 - 854740 | 16810.7 |
| duf2002 family protein | DN590_04135 | Not Available | Negative | 854777 - 855127 | 13284.7 |
| plp-dependent aminotransferase family protein | DN590_04140 | Not Available | Negative | 855251 - 856585 | 49936.2 |
| carboxymuconolactone decarboxylase family protein | DN590_04145 | Not Available | Positive | 856676 - 857107 | 16053.3 |
| glutaredoxin-like protein nrdh | DN590_04150 | Not Available | Positive | 857389 - 857634 | 9303.13 |
| class ib ribonucleoside-diphosphate reductase assembly flavoprotein nrdi | DN590_04155 | Not Available | Positive | 857631 - 858041 | 15355.3 |
| class 1b ribonucleoside-diphosphate reductase subunit beta | DN590_04165 | Not Available | Positive | 860161 - 861120 | 36191.5 |
| proline/glycine betaine abc transporter atp-binding protein prov | DN590_04175 | Not Available | Positive | 861475 - 862677 | 44116.5 |
| proline/glycine betaine abc transporter permease prow | DN590_04180 | Not Available | Positive | 862670 - 863734 | 37585.0 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

