Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadp-dependent succinate-semialdehyde dehydrogenase i | DN590_04075 | Not Available | Positive | 846253 - 847701 | 51868.1 |
| 4-aminobutyrate--2-oxoglutarate transaminase | DN590_04080 | Not Available | Positive | 847727 - 849010 | 45764.3 |
| hypothetical protein | DN590_04085 | Not Available | Positive | 848983 - 849183 | 6820.31 |
| gaba permease | DN590_04090 | Not Available | Positive | 849158 - 850558 | 50963.9 |
| dna-binding transcriptional regulator csir | DN590_04095 | Not Available | Positive | 850604 - 851290 | 26056.7 |
| peptidoglycan-binding protein lysm | DN590_04100 | Not Available | Negative | 851303 - 851752 | 16062.9 |
| yqae/pmp3 family membrane protein | DN590_04105 | Not Available | Negative | 851848 - 852006 | 5898.6 |
| arsr family transcriptional regulator | DN590_04110 | Not Available | Positive | 852190 - 852489 | 10617.0 |
| duf2892 domain-containing protein | DN590_04115 | Not Available | Positive | 852499 - 853026 | 18495.6 |
| hypothetical protein | DN590_04120 | Not Available | Positive | 853117 - 853296 | 6402.58 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

