Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain GEO_16_Eff_A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1321210 bp
Thymine Count
1313182 bp
Guanine Count
1404681 bp
Cytosine Count
1426347 bp
Genome Length
5465420 bp
Protein-coding Genes
5038 genes
Non-Coding Genes
330 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Recombinase rect | DN590_12390 | Not Available | Positive | 2515536 - 2516627 | 40200.5 |
| hypothetical protein | DN590_12395 | Not Available | Positive | 2516662 - 2517006 | 13675.8 |
| hypothetical protein | DN590_12400 | Not Available | Positive | 2516999 - 2517202 | 7445.63 |
| Hypothetical protein | DN590_12405 | Not Available | Positive | 2517189 - 2517431 | 9012.98 |
| Excisionase | DN590_12410 | Not Available | Positive | 2517496 - 2517768 | 10237.4 |
| Integrase | DN590_12415 | Not Available | Positive | 2517737 - 2518822 | 41580.9 |
| Hypothetical protein | DN590_12420 | Not Available | Negative | 2519159 - 2519497 | 12281.1 |
| hypothetical protein | DN590_12425 | Not Available | Negative | 2519518 - 2520390 | 32580.7 |
| copc domain-containing protein yoba | DN590_12430 | Not Available | Negative | 2520394 - 2520768 | 13002.4 |
| Putative dna polymerase | DN590_12435 | Not Available | Positive | 2520912 - 2521142 | 8817.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

