Citrobacter koseri strain NCTC11075

Gram-negativeRodMotileFacultatively anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter koseri strain NCTC11075 is a Gram-negative, facultatively anaerobic bacterium characterized by its rod shape and motility, facilitated by the presence of flagella. This strain thrives in a mesophilic temperature range, indicating an optimal growth temperature typically between 20°C and 45°C. As a free-living organism, C. koseri can inhabit various environments, including those associated with its hosts, which include Homo sapiens and Rodentia. This bacterium is known for its pathogenic effects in humans, where it is implicated in several serious health conditions such as brain abscesses, meningitis, sepsis, urinary tract infections (UTIs), and infective aortic endocarditis. Notably, it is associated with both community-acquired and catheter-associated urinary tract infections (CAUTI), demonstrating its potential to cause significant clinical issues. The presence of a single replicon and two membranes is consistent with the general structure of Gram-negative bacteria, which feature an outer membrane that plays a role in their pathogenicity and resistance to certain antibiotics. The association of C. koseri with severe infections highlights its role in human health and disease, particularly in immunocompromised individuals or those with underlying health conditions. Understanding the ecological niches of C. koseri, along with its pathogenic potential, underscores the importance of monitoring this bacterium in both clinical and environmental settings.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter koseri
Strainstrain NCTC11075

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Citrobacter koseri strain NCTC11075
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultatively anaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens, Rodentia
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Citrobacter koseri strain NCTC11075


Gene Summary

Adenine Count

1111271 bp

Thymine Count

1106748 bp

Guanine Count

1284107 bp

Cytosine Count

1283631 bp

Genome Length

4785757 bp

Protein-coding Genes

4361 genes

Non-Coding Genes

217 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Hypothetical proteinEL089_RS00005Not AvailablePositive3 - 132149325.6
AttlNot AvailableNot AvailablePositive396 - 409Not Available
Virion morphogenesis proteinEL089_RS00010Not AvailablePositive1314 - 210830916.9
I proteinEL089_RS00015Not AvailablePositive2308 - 326834281.3
Major head subunitEL089_RS00020Not AvailablePositive3272 - 416532616.3
hypothetical proteinEL089_RS00025Not AvailablePositive4250 - 481919657.6
Hypothetical proteinEL089_RS00030Not AvailablePositive4819 - 525916656.8
Phage virion morphogenesis proteinEL089_RS00035Not AvailablePositive5259 - 580019399.0
Hypothetical proteinEL089_RS00040Not AvailablePositive5797 - 640522481.7
duf2635 domain-containing proteinEL089_RS00045Not AvailablePositive6398 - 65866731.16

Displaying genes 1 – 10 of 4578 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

59 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00055001-octadecanoyl-sn-glycero-3-phosphateC21H41O7PChemical structure of 1-octadecanoyl-sn-glycero-3-phosphateNot available
Average436.5198Da
Monoisotopic436.2589902Da
BASm0012554N-acetyl-beta-D-glucosaminyl-(1->4)-1,6-anhydro-N-acetyl-beta-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-diaminoheptanedioate-D-alanineC37H57N7O20Not availableNot available
Average919.893Da
Monoisotopic919.366934423Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014041Oleic acidC18H34O2Chemical structure of Oleic acid112-80-1
Average282.4614Da
Monoisotopic282.255880332Da
BASm0014182Vaccenic acidC18H34O2Chemical structure of Vaccenic acidNULL
Average282.468Da
Monoisotopic282.255880335Da
BASm0014219Palmitoleic acidC16H30O2Chemical structure of Palmitoleic acidNULL
Average254.4082Da
Monoisotopic254.224580204Da
BASm0014222DiethanolamineC4H11NO2Chemical structure of DiethanolamineNULL
Average105.1356Da
Monoisotopic105.078978601Da
BASm0017263NADPC21H29N7O17P3Chemical structure of NADP53-59-8
Average744.4129Da
Monoisotopic744.083277073Da

Displaying 1–10 of 59 metabolites

Health Effects

Health ConditionRelationReference
Urinary tract infectionsCausesPMC13268207
Community-acquired utisCausesPMC13268207
Infective aortic endocarditisCausesPMC2786675
Brain abscessesCausesPMC2833190
Catheter-associated urinary tract infectionCausesPMC2900259
CautiCausesPMC2900259
Central nervous system infectionsCausesPMC4793686
SepsisCausesPMC4793686
MeningitisCausesPMC4793686
Multiple brain abscessesCausesPMC4793686

Displaying health effects 1 – 10 of 10 in total