Citrobacter freundii strain R47

Gram-negativeRodFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter freundii strain R47 is a Gram-negative, rod-shaped bacterium characterized by its facultative anaerobic metabolism and the presence of flagella, which aids in motility. This strain has been identified in various habitats, including hospital sewage, the intestinal tract of different hosts, sewage, soil, and surface waters. C. freundii strain R47 is known for its role as an opportunistic pathogen, causing infections in humans and a diverse range of animal hosts. In humans, it has been associated with urinary and respiratory tract infections, as well as wound infections. The strain also poses health risks to various animals, including horses, dogs, cats, and aquatic species, leading to similar respiratory and urinary tract infections. Notably, it has been documented in a wide array of hosts, which includes Homo sapiens, domestic animals like Canis lupus familiaris and Felis catus, and various aquatic species such as Tilapia and Cyprinus carpio. Genetically, C. freundii strain R47 possesses two replicons, indicating a complex genetic structure that may contribute to its adaptability in diverse environments. The strain is nonsporulating, which may reflect its ecological strategies for survival and proliferation in nutrient-rich habitats like sewage and the intestinal tracts of its hosts. The ecological versatility of C. freundii strain R47 underscores its potential impact on both human health and animal welfare, particularly in environments where these organisms cohabit, demonstrating the interconnectedness of microbial life and the significance of monitoring opportunistic pathogens in clinical and environmental settings.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter freundii
Strainstrain R47

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter freundii strain R47
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitathospital sewage; intestinal tract; sewage; soil; surface waters
Biotic relationshipNot Available
Host(s)Homo sapiens, Metazoa, Oryctolagus cuniculus
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter freundii strain R47


Gene Summary

Adenine Count

12293 bp

Thymine Count

12398 bp

Guanine Count

14603 bp

Cytosine Count

14670 bp

Genome Length

53964 bp

Protein-coding Genes

69 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinFGF61_RS01815Not AvailablePositive242 - 4668498.13
helix-turn-helix domain-containing proteinFGF61_RS01820Not AvailableNegative484 - 80411651.1
chloramphenicol/florfenicol efflux mfs transporter florFGF61_RS01825Not AvailableNegative832 - 204642713.4
duf3363 domain-containing proteinFGF61_RS26295Not AvailableNegative2263 - 314733025.4
helix-turn-helix domain-containing proteinFGF61_RS01835Not AvailableNegative3178 - 400830371.7
is6-like element is1006 family transposaseFGF61_RS01840Not AvailablePositive4072 - 477627783.5
hypothetical proteinFGF61_RS01845Not AvailableNegative4861 - 533717330.3
tn3-like element tnas3 family transposaseFGF61_RS01850Not AvailableNegative5271 - 8222110604.0
recombinase family proteinFGF61_RS01855Not AvailableNegative8225 - 878521330.6
duf3330 domain-containing proteinFGF61_RS01860Not AvailableNegative8911 - 91237375.51

Displaying genes 1 – 10 of 420 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Infections in animalsCausesPMC6885840
Infections of the urinary and respiratory tracts in humansCausesPMC6885840
Respiratory tract and wound infections in horsesCausesPMC6885840
Respiratory tract infections in dogsCausesPMC6885840
Pleuritis and urinary tract infections in catsCausesPMC6885840
Bacterial infectionsCausesPMC7578172
Opportunistic infectionsCausesPMC12838003

Displaying health effects 1 – 7 of 7 in total