Citrobacter freundii strain UMH14

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter freundii strain UMH14 is a gram-negative, rod-shaped bacterium characterized as a facultative anaerobe with true flagella. This strain has been found in diverse habitats, including hospital sewage, intestinal tracts, various sewage systems, soil, and surface waters. Its broad distribution suggests a significant ecological role in both natural and anthropogenic environments. The strain has a single replicon and is associated with multiple hosts, including Homo sapiens, various metazoans, and domesticated animals such as dogs (Canis lupus familiaris) and cats (Felis catus). It is also found in aquatic species like tilapia (Oryctolagus cuniculus) and cyprinids, indicating its adaptability across different ecological niches. Citrobacter freundii is known for its role as an opportunistic pathogen, leading to infections in humans and animals. It is implicated in urinary and respiratory tract infections in humans, as well as respiratory tract and wound infections in horses and dogs. Cats can also experience pleuritis and urinary tract infections associated with this bacterium. These health effects highlight its potential to impact both veterinary and human health, particularly in immunocompromised individuals or those with pre-existing conditions. The presence of Citrobacter freundii strain UMH14 in hospital sewage underscores its relevance in healthcare settings, where it may pose risks of nosocomial infections. Furthermore, its ability to thrive in various environments and hosts reflects its ecological versatility, making it an important bacterium for studying microbial dynamics in both clinical and environmental contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter freundii
Strainstrain UMH14

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter freundii strain UMH14
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitathospital sewage; intestinal tract; sewage; soil; surface waters
Biotic relationshipNot Available
Host(s)Homo sapiens, Metazoa, Oryctolagus cuniculus
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter freundii strain UMH14


Gene Summary

Adenine Count

15943 bp

Thymine Count

15743 bp

Guanine Count

19927 bp

Cytosine Count

19661 bp

Genome Length

71274 bp

Protein-coding Genes

79 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
copper homeostasis periplasmic binding protein copcCUC46_RS24495Not AvailablePositive13241 - 1362113400.5
copper homeostasis membrane protein copdCUC46_RS24500Not AvailablePositive13626 - 1455533692.2
copper response regulator transcription factor pcorCUC46_RS24505Not AvailablePositive14609 - 1528925670.1
sensor histidine kinaseCUC46_RS24510Not AvailablePositive15286 - 1668652828.3
hypothetical proteinCUC46_RS24515Not AvailablePositive16895 - 1732915762.6
recombinase family proteinCUC46_RS24525Not AvailablePositive17742 - 1833821762.2
rpn family recombination-promoting nuclease/putative transposaseCUC46_RS24530Not AvailablePositive18462 - 1939134787.9
duf2913 family proteinCUC46_RS24535Not AvailableNegative19388 - 1999922528.9
hypothetical proteinCUC46_RS24540Not AvailableNegative19996 - 2039115864.5
3'-5' exonucleaseCUC46_RS25310Not AvailableNegative20444 - 2094418059.3

Displaying genes 11 – 20 of 79 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Infections in animalsCausesPMC6885840
Infections of the urinary and respiratory tracts in humansCausesPMC6885840
Respiratory tract and wound infections in horsesCausesPMC6885840
Respiratory tract infections in dogsCausesPMC6885840
Pleuritis and urinary tract infections in catsCausesPMC6885840
Bacterial infectionsCausesPMC7578172
Opportunistic infectionsCausesPMC12838003

Displaying health effects 1 – 7 of 7 in total