Flavobacterium psychrophilum strain Z2

RodNon-motileaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium psychrophilum strain Z2 is a psychrophilic bacterium predominantly found in multiple habitats. It is characterized as a chemoheterotroph, relying on organic compounds for energy, and requires oxygen for its growth, making it an aerobic organism. The bacterium exhibits a rod shape and is non-motile, despite the presence of flagella. Flavobacterium psychrophilum strain Z2 thrives optimally at 15°C, within a temperature range that aligns with its psychrophilic nature. This strain has a single replicon and is associated with notable health effects in aquatic species, particularly in Oncorhynchus mykiss (rainbow trout) and other members of the Salmonidae family. It is known to cause bacterial cold water disease and rainbow trout fry syndrome, which can have significant implications for fish farming and wild fish populations. The nonsporulating nature of this bacterium means it does not form spores, which can influence its survival strategies in fluctuating environmental conditions. The accession number NZ_CP012586.1 is associated with this strain, providing a reference for further genetic and genomic studies. The ecological impact of Flavobacterium psychrophilum strain Z2 underscores its role in aquatic ecosystems, particularly as a pathogen affecting fish health. Understanding its biology can aid in managing disease in aquaculture and preserving the health of wild fish populations.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium psychrophilum
Strainstrain Z2

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium psychrophilum strain Z2
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature15
Temperature rangePsychrophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Oncorhynchus mykiss, Salmonidae
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Flavobacterium psychrophilum strain Z2, complete genome.

Gene Summary

Adenine Count

1261992 bp

Thymine Count

1262733 bp

Guanine Count

812011 bp

Cytosine Count

805488 bp

Genome Length

4142224 bp

Protein-coding Genes

3568 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
acyl-[acyl-carrier-protein] thioesteraseAMR72_RS16935Not AvailableNegative3811643 - 381238328942.7
trna (adenosine(37)-n6)-dimethylallyltransferase miaaAMR72_RS16940Not AvailableNegative3812370 - 381329935438.2
ion transporterAMR72_RS16945Not AvailableNegative3813296 - 381412330555.2
exonuclease domain-containing proteinAMR72_RS16950Not AvailableNegative3814162 - 381552651983.1
yggs family pyridoxal phosphate-dependent enzymeAMR72_RS16955Not AvailableNegative3815621 - 381628024526.8
duf1015 domain-containing proteinAMR72_RS16960Not AvailableNegative3816384 - 381759847326.4
3-hydroxyacyl-coa dehydrogenase family proteinAMR72_RS16965Not AvailableNegative3817715 - 381860532252.6
gfo/idh/moca family proteinAMR72_RS16970Not AvailableNegative3818649 - 381961435696.8
protein-l-isoaspartate(d-aspartate) o-methyltransferaseAMR72_RS16975Not AvailablePositive3819787 - 382042823740.9
ssra-binding protein smpbAMR72_RS16980Not AvailableNegative3820457 - 382091217496.3

Displaying genes 3381 – 3390 of 3627 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Bacterial cold water diseaseCausesPMC12152302
Rainbow trout fry syndromeCausesPMC12152302

Displaying health effects 1 – 2 of 2 in total