Flavobacterium psychrophilum strain CSF259-93

RodNon-motileaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium psychrophilum strain CSF259-93 is a nonsporulating rod-shaped bacterium that thrives optimally at a temperature of 15.0°C. As a chemoheterotroph, it derives its energy from organic compounds, which suggests a versatile metabolic capability that enables it to exploit various substrates in its environment. This strain is typically found in multiple habitats, indicating a broad ecological distribution and potential adaptability to different environmental conditions. The ability to thrive at low temperatures is particularly noteworthy, as it suggests that F. psychrophilum may play a significant role in cold-water ecosystems, potentially influencing nutrient cycling and organic matter decomposition in these habitats. Its presence in diverse environments might also indicate its ecological versatility, allowing it to interact with various microbial communities and contribute to the overall dynamics of the ecosystems it inhabits. Further research into its metabolic pathways and ecological interactions could provide deeper insights into its role within cold-water environments and its potential applications in biotechnology or environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium psychrophilum
Strainstrain CSF259-93

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium psychrophilum strain CSF259-93
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature15
Temperature rangePsychrophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Flavobacterium psychrophilum strain CSF259-93


Gene Summary

Adenine Count

972036 bp

Thymine Count

986124 bp

Guanine Count

471775 bp

Cytosine Count

470800 bp

Genome Length

2900735 bp

Protein-coding Genes

2497 genes

Non-Coding Genes

70 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
atpaseFE46_RS13600Not Available+1 - 3333127491.0
rrna maturation rnase ybeyFE46_RS00010Not Available+3326 - 374816662.4
trna uridine-5-carboxymethylaminomethyl(34) synthesis enzyme mnmgFE46_RS00015Not Available+3959 - 583069381.4
bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-o-methyltransferase ubigFE46_RS00020Not Available+5994 - 684232554.5
omph family outer membrane proteinFE46_RS00025Not Available+7106 - 766921327.6
t9ss type a sorting domain-containing proteinFE46_RS00030Not Available+8503 - 1098384219.2
helix-turn-helix domain-containing proteinFE46_RS00035Not Available+11326 - 1359986897.7
dinb family proteinFE46_RS00040Not Available-14450 - 1500121685.4
crp/fnr family transcriptional regulatorFE46_RS00045Not Available-15057 - 1556619763.1
hypothetical proteinFE46_RS00050Not Available-15603 - 1598614057.5

Displaying genes 1 – 10 of 2567 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

47 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm0002307(2R,3R)-2,3-dihydroxy-3-methylpentanoateC6H11O4Chemical structure of (2R,3R)-2,3-dihydroxy-3-methylpentanoateNot available
Average147.1491Da
Monoisotopic147.06573384Da
BASm00027107,8-dihydrofolateC19H19N7O6Chemical structure of 7,8-dihydrofolateNot available
Average441.405Da
Monoisotopic441.1407785Da
BASm0002751(S)-4-amino-5-oxopentanoateC5H9NO3Chemical structure of (S)-4-amino-5-oxopentanoateNot available
Average131.1299Da
Monoisotopic131.0582432Da
BASm0002858all-trans-undecaprenyl phosphateC55H89O4PChemical structure of all-trans-undecaprenyl phosphateNot available
Average845.288Da
Monoisotopic844.6509455Da
BASm0002963meso-2,6-diaminoheptanedioateC7H14N2O4Chemical structure of meso-2,6-diaminoheptanedioate922-54-3
Average190.1971Da
Monoisotopic190.0953569Da
BASm0003116all-trans-undecaprenyl diphosphateC55H89O7P2Chemical structure of all-trans-undecaprenyl diphosphateNot available
Average924.259Da
Monoisotopic923.6099999Da

Displaying 1–10 of 47 metabolites