Flavobacterium columnare

Gram-negativeRodMotile

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium columnare is a mesophilic, chemoheterotrophic, Gram-negative bacterium that thrives in a temperature range of 15-30°C (59-86°F). As a chemoheterotroph, it produces energy by breaking down organic compounds, relying on external sources of carbon and energy. This microbe is capable of fermentative metabolism, utilizing energy from the degradation of complex organic molecules. F. columnare is a rod-shaped bacterium, typically measuring 0.5-1.5 μm in length and 0.2-0.4 μm in width. The bacterium's cell wall is negative when stained with Gram stain, meaning it lacks a thick peptidoglycan layer. This characteristic, along with its rod shape, is typical of many Gram-negative bacteria. F. columnare has been found to inhabit a wide range of environments, including aquatic ecosystems, soil, and the gastrointestinal tracts of various animals, including fish and humans. F. columnare is an obligate aerobe, requiring the presence of oxygen to survive. In its natural habitat, it likely thrives in well-oxygenated environments, exploiting the abundance of organic matter and oxygen. Notably, this microbe has been associated with various diseases, including skin and soft tissue infections, as well as ocular infections in humans. Despite its potential pathogenicity, F. columnare has also been found to play a vital role in decomposing organic matter, breaking down complex compounds into simpler substances. Its ability to degrade organic matter makes it an important component of aquatic ecosystems, contributing to the cycling of nutrients and the maintenance of ecosystem balance. Studies have also shown that F. columnare possesses a unique antibiotic resistance mechanism, which enables it to survive in environments where other microorganisms would be unable to thrive. This remarkable adaptability underscores the importance of continued research into the biology and ecology of this fascinating microbe, allowing us to better understand its role in shaping our natural and medical environments.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium columnare
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium columnare
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Flavobacterium columnare

Accession NumberOLKH00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2709 genes

Non-Coding Genes

77 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Hypothetical proteinFLACOL_01055Not Available-1244294 - 124512131748.9
hypothetical proteinFLACOL_01056Not Available-1245321 - 12454825566.95
hypothetical proteinFLACOL_01057Not Available-1245482 - 124602719608.9
Structural proteinFLACOL_01058Not Available-1246031 - 124642014766.9
Hypothetical proteinFLACOL_01059Not Available-1246425 - 124724630360.0
Hypothetical proteinFLACOL_01060Not Available-1247243 - 124770718768.3
NucleotidyltransferaseFLACOL_01061Not Available-1247697 - 124853631499.0
Hypothetical proteinFLACOL_01062Not Available-1248538 - 124883711019.2
hypothetical proteinFLACOL_01063Not Available-1248815 - 124917714124.1
hypothetical proteinFLACOL_01064Not Available-1249195 - 124971019292.1

Displaying genes 1 – 10 of 2786 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

2 records
Metabolite IDMetabolite nameStructureCAS number
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014071ChitinC24H41N3O16Chemical structure of Chitin1398-61-4
Average627.5928Da
Monoisotopic627.248682279Da

Displaying 1–2 of 2 metabolites