Flavobacterium psychrophilum strain Z2

RodNon-motileaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium psychrophilum strain Z2 is a psychrophilic bacterium predominantly found in multiple habitats. It is characterized as a chemoheterotroph, relying on organic compounds for energy, and requires oxygen for its growth, making it an aerobic organism. The bacterium exhibits a rod shape and is non-motile, despite the presence of flagella. Flavobacterium psychrophilum strain Z2 thrives optimally at 15°C, within a temperature range that aligns with its psychrophilic nature. This strain has a single replicon and is associated with notable health effects in aquatic species, particularly in Oncorhynchus mykiss (rainbow trout) and other members of the Salmonidae family. It is known to cause bacterial cold water disease and rainbow trout fry syndrome, which can have significant implications for fish farming and wild fish populations. The nonsporulating nature of this bacterium means it does not form spores, which can influence its survival strategies in fluctuating environmental conditions. The accession number NZ_CP012586.1 is associated with this strain, providing a reference for further genetic and genomic studies. The ecological impact of Flavobacterium psychrophilum strain Z2 underscores its role in aquatic ecosystems, particularly as a pathogen affecting fish health. Understanding its biology can aid in managing disease in aquaculture and preserving the health of wild fish populations.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium psychrophilum
Strainstrain Z2

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium psychrophilum strain Z2
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature15
Temperature rangePsychrophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Oncorhynchus mykiss, Salmonidae
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Flavobacterium psychrophilum strain Z2, complete genome.

Gene Summary

Adenine Count

1261992 bp

Thymine Count

1262733 bp

Guanine Count

812011 bp

Cytosine Count

805488 bp

Genome Length

4142224 bp

Protein-coding Genes

3568 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nrtr dna-binding winged helix domain-containing proteinAMR72_RS08425Not AvailableNegative1900896 - 190161527461.2
fggy-family carbohydrate kinaseAMR72_RS08430Not AvailablePositive1901864 - 190339055397.7
xylose isomeraseAMR72_RS08435Not AvailablePositive1903359 - 190468449821.5
tonb-dependent receptorAMR72_RS08440Not AvailablePositive1904734 - 1907841113383.0
ragb/susd family nutrient uptake outer membrane proteinAMR72_RS08445Not AvailablePositive1907854 - 190944058643.7
hypothetical proteinAMR72_RS08450Not AvailablePositive1909466 - 191030230943.0
glycoside hydrolase family 2 tim barrel-domain containing proteinAMR72_RS08455Not AvailablePositive1910362 - 191283991479.5
glycoside hydrolase family 97 proteinAMR72_RS08460Not AvailablePositive1913012 - 191501275889.2
glycoside hydrolase family 3 c-terminal domain-containing proteinAMR72_RS08465Not AvailablePositive1915016 - 191717579457.7
glycoside hydrolase family 3 c-terminal domain-containing proteinAMR72_RS08470Not AvailablePositive1917188 - 191943181332.8

Displaying genes 1681 – 1690 of 3627 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Bacterial cold water diseaseCausesPMC12152302
Rainbow trout fry syndromeCausesPMC12152302

Displaying health effects 1 – 2 of 2 in total