Shigella boydii CDC 3083-94

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Shigella

Description

Shigella boydii strain CDC 3083-94 is a Gram-negative, rod-shaped bacterium that is notable for its pathogenicity. This organism is a facultative anaerobe, meaning it can survive in both the presence and absence of oxygen. It is classified as a chemoorganotroph, utilizing organic compounds as its energy source. The bacterium typically exists in pairs or singles and is non-motile, which distinguishes it from other members of the Enterobacteriaceae family that may possess flagella for movement. Shigella boydii CDC 3083-94 thrives optimally at a temperature of 37°C, falling within the mesophilic temperature range conducive to its growth. It is characterized by having four replicons and two membranes, which are common traits among Gram-negative bacteria. Importantly, this strain does not form spores, indicating a reliance on other survival strategies in adverse conditions. In terms of ecological and biotic relationships, S. boydii is free-living yet is well-known for its role in causing shigellosis, an infectious disease that can lead to severe gastrointestinal distress in humans. The presence of pathogenic strains like S. boydii underscores the importance of understanding microbial interactions within host-associated habitats. This knowledge can facilitate better strategies for disease prevention and control in populations exposed to this pathogen. Accessions for this strain include NC_010657.1, NC_010658.1, NC_010660.1, and NC_010672.1, providing further avenues for genomic studies and research.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusShigella
SpeciesShigella boydii
StrainBS512

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Shigella boydii CDC 3083-94
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNonsporulating
Energy sourceChemoorganotroph
PathogenicityYes

Genome Summary

Shigella boydii CDC 3083-94


Gene Summary

Adenine Count

10151 bp

Thymine Count

9260 bp

Guanine Count

7507 bp

Cytosine Count

6185 bp

Genome Length

33103 bp

Protein-coding Genes

43 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tail-associated lysozymeSBBS512_RS00125Not AvailablePositive14656 - 1507214526.2
hypothetical proteinSBBS512_RS00130Not AvailablePositive15087 - 1538011486.2
toxin-antitoxin system hicb family antitoxinSBBS512_RS27485Not AvailablePositive15631 - 158166950.08
relaxosome-coupling protein taxaSBBS512_RS00135Not AvailablePositive16177 - 1668019075.4
dna relaxase/nickase taxcSBBS512_RS00140Not AvailablePositive16684 - 1791347362.7
helix-turn-helix transcriptional regulatorSBBS512_RS00145Not AvailablePositive17990 - 1828310810.1
eexn family lipoproteinSBBS512_RS00150Not AvailablePositive18280 - 184958068.57
lytic transglycosylase domain-containing proteinSBBS512_RS00155Not AvailablePositive18852 - 1947223205.4
trbc/virb2 family proteinSBBS512_RS00160Not AvailablePositive19540 - 198129230.59
virb4 family type iv secretion/conjugal transfer atpaseSBBS512_RS00165Not AvailablePositive19831 - 22578103926.0

Displaying genes 21 – 30 of 5177 in total

Metabolites

1992 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 1992 metabolites

Health Effects

No health effects information available for this bacterium.