Shigella boydii CDC 3083-94

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Shigella

Description

Shigella boydii strain CDC 3083-94 is a Gram-negative, rod-shaped bacterium that is notable for its pathogenicity. This organism is a facultative anaerobe, meaning it can survive in both the presence and absence of oxygen. It is classified as a chemoorganotroph, utilizing organic compounds as its energy source. The bacterium typically exists in pairs or singles and is non-motile, which distinguishes it from other members of the Enterobacteriaceae family that may possess flagella for movement. Shigella boydii CDC 3083-94 thrives optimally at a temperature of 37°C, falling within the mesophilic temperature range conducive to its growth. It is characterized by having four replicons and two membranes, which are common traits among Gram-negative bacteria. Importantly, this strain does not form spores, indicating a reliance on other survival strategies in adverse conditions. In terms of ecological and biotic relationships, S. boydii is free-living yet is well-known for its role in causing shigellosis, an infectious disease that can lead to severe gastrointestinal distress in humans. The presence of pathogenic strains like S. boydii underscores the importance of understanding microbial interactions within host-associated habitats. This knowledge can facilitate better strategies for disease prevention and control in populations exposed to this pathogen. Accessions for this strain include NC_010657.1, NC_010658.1, NC_010660.1, and NC_010672.1, providing further avenues for genomic studies and research.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusShigella
SpeciesShigella boydii
StrainBS512

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Shigella boydii CDC 3083-94
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNonsporulating
Energy sourceChemoorganotroph
PathogenicityYes

Genome Summary

Shigella boydii CDC 3083-94


Gene Summary

Adenine Count

1915 bp

Thymine Count

1870 bp

Guanine Count

2078 bp

Cytosine Count

1574 bp

Genome Length

7437 bp

Protein-coding Genes

11 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf6012 family proteinSBBS512_RS00020Not AvailablePositive139 - 72622794.3
type ia dna topoisomeraseSBBS512_RS00025Not AvailablePositive738 - 289179196.6
hemolysin expression modulator hhaSBBS512_RS00030Not AvailablePositive2888 - 30948176.88
h-ns family nucleoid-associated regulatory proteinSBBS512_RS00035Not AvailablePositive3112 - 357617939.5
hypothetical proteinSBBS512_RS00040Not AvailablePositive3680 - 433624456.3
tyrosine-type recombinase/integraseSBBS512_RS00045Not AvailablePositive4892 - 571631363.1
division plane positioning atpase mipzSBBS512_RS00050Not AvailablePositive5821 - 648024331.4
hypothetical proteinSBBS512_RS00055Not AvailablePositive6574 - 687611095.4
hypothetical proteinSBBS512_RS00060Not AvailablePositive6912 - 71639564.75
hypothetical proteinSBBS512_RS34575Not AvailablePositive7225 - 74407940.32

Displaying genes 1 – 10 of 5177 in total

Metabolites

1803 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da

Displaying 1–10 of 1803 metabolites

Health Effects

No health effects information available for this bacterium.