Shigella boydii strain ECH+23

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Shigella

Description

Shigella boydii strain ECH+23 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, indicating its capability to survive in both aerobic and anaerobic environments, which may provide it with a versatile metabolic advantage in host-associated habitats. As a chemoorganotroph, S. boydii strain ECH+23 utilizes organic compounds as its primary energy source, suggesting a reliance on host-derived nutrients for growth and sustenance. The optimal growth temperature for this strain is approximately 37.0°C, which aligns with the typical body temperature of many mammalian hosts, potentially facilitating its adaptation to the host environment. The specific association with hosts underscores the bacterium's ecological niche, where it likely interacts with the host's microbiome and immune system. Understanding the traits of S. boydii strain ECH+23 can provide insights into its ecological role within the gut and its potential interactions with other microbial communities. This strain's ability to thrive in host-associated environments may reflect an evolutionary adaptation that allows it to exploit host resources effectively, highlighting the dynamic relationship between pathogens and their hosts in maintaining microbial diversity and ecological balance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusShigella
SpeciesShigella boydii
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Shigella boydii strain ECH+23
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Shigella boydii strain ECH+23


Gene Summary

Adenine Count

1363604 bp

Thymine Count

1359058 bp

Guanine Count

1371975 bp

Cytosine Count

1387578 bp

Genome Length

5482215 bp

Protein-coding Genes

5169 genes

Non-Coding Genes

380 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Tail tape measure proteinCI719_02750Not Available-532124 - 53325640554.7
Gpe family tail proteinCI719_02755Not Available-533243 - 5334798906.51
Tail proteinCI719_02760Not Available-533407 - 53377213150.7
Major tail tube proteinCI719_02765Not Available-533827 - 53433918879.6
Tail sheath family proteinCI719_02770Not Available-534339 - 53552343477.5
Late control d family proteinCI719_02775Not Available+535681 - 5359479663.56
Hypothetical proteinCI719_04680Not Available+892242 - 89298827250.5
gntr family transcriptional regulatorCI719_04685Not Available+893077 - 89376326580.7
Putative selenium-binding protein ydfzCI719_04690Not Available+893940 - 8941437276.83
mannitol dehydrogenase family proteinCI719_04695Not Available-894179 - 89563953714.3

Displaying genes 1 – 10 of 5549 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites