Flavobacterium psychrophilum strain DK095

RodNon-motileaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium psychrophilum strain DK095 is a psychrophilic, aerobic bacterium characterized by its rod shape and the presence of flagella, though it does not exhibit mobility. This strain is a chemoheterotroph, deriving its energy from organic compounds rather than photosynthesis. It thrives at an optimal temperature of 15°C and is adapted to cold environments, with a temperature range suitable for growth in cold water habitats. F. psychrophilum is known to infect fish, particularly Oncorhynchus mykiss (rainbow trout) and members of the Salmonidae family, causing significant health issues such as bacterial cold water disease and rainbow trout fry syndrome. These diseases can have detrimental effects on fish populations, leading to economic losses in aquaculture and impacting natural ecosystems. This strain has a single replicon and does not form spores, which is a notable trait for its classification and study. Its genomic information is accessible under the accession number FYCI00000000.1, providing a basis for further research into its pathogenic mechanisms and ecological roles. The ecological insight from studying Flavobacterium psychrophilum strain DK095 highlights the importance of understanding microbial interactions in aquatic environments, particularly how pathogenic bacteria can influence fish health and population dynamics in cold water ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium psychrophilum
Strainstrain DK095

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium psychrophilum strain DK095
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature15
Temperature rangePsychrophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Oncorhynchus mykiss, Salmonidae
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Flavobacterium psychrophilum strain DK095 genome assembly, contig:

Gene Summary

Adenine Count

953413 bp

Thymine Count

954073 bp

Guanine Count

458257 bp

Cytosine Count

457360 bp

Genome Length

2823178 bp

Protein-coding Genes

2528 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative permease yojeDK095_100030Not AvailablePositive55154 - 5604134249.3
competence protein commDK095_100031Not AvailableNegative56339 - 5787456298.9
hypothetical proteinDK095_110001Not AvailablePositive58383 - 584452392.96
piperideine-6-carboxylate dehydrogenaseDK095_110002Not AvailablePositive58492 - 6004555325.3
hypothetical proteinDK095_110003Not AvailableNegative60214 - 603394773.33
thiamine-monophosphate kinaseDK095_110004Not AvailableNegative60773 - 6181938296.9
3-oxoacyl-(acyl-carrier-protein) synthaseDK095_110005Not AvailableNegative62370 - 6352441918.7
adenosylmethionine--8-amino-7-oxononanoate transaminaseDK095_110006Not AvailableNegative63622 - 6489347660.2
atp-dependent dethiobiotin synthetase biodDK095_110007Not AvailableNegative64967 - 6558422740.4
lipid-a-disaccharide synthaseDK095_110008Not AvailableNegative65685 - 6681542945.1

Displaying genes 61 – 70 of 2577 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Bacterial cold water diseaseCausesPMC12152302
Rainbow trout fry syndromeCausesPMC12152302

Displaying health effects 1 – 2 of 2 in total