Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Rikenellaceae |
| Genus | Alistipes |
| Species | Alistipes timonensis |
| Strain | JC136 strain DSM 25383 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
724649 bp
Thymine Count
711172 bp
Guanine Count
1019996 bp
Cytosine Count
1032776 bp
Genome Length
3488964 bp
Protein-coding Genes
2681 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uridylate kinase | SAMN05444145_1037 | Not Available | Positive | 1172917 - 1173624 | 25234.7 |
| peroxiredoxin | SAMN05444145_1038 | Not Available | Positive | 1173629 - 1174204 | 21572.1 |
| ribosome recycling factor | SAMN05444145_1039 | Not Available | Positive | 1174217 - 1174774 | 20656.8 |
| hypothetical protein | SAMN05444145_10310 | Not Available | Negative | 1174852 - 1175760 | 33286.1 |
| susd family protein | SAMN05444145_10311 | Not Available | Negative | 1175765 - 1177249 | 56298.3 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05444145_10312 | Not Available | Negative | 1177260 - 1180331 | 114028.0 |
| alpha,alpha-trehalase | SAMN05444145_10313 | Not Available | Negative | 1180343 - 1181683 | 51435.4 |
| mannan endo-1,4-beta-mannosidase | SAMN05444145_10314 | Not Available | Negative | 1181696 - 1182817 | 41659.0 |
| mannan endo-1,4-beta-mannosidase/mannan endo-1,4-beta-mannosidase | SAMN05444145_10315 | Not Available | Negative | 1182844 - 1183923 | 40755.6 |
| arac-type dna-binding protein | SAMN05444145_10316 | Not Available | Negative | 1183982 - 1184875 | 34194.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
