Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Rikenellaceae |
| Genus | Alistipes |
| Species | Alistipes timonensis |
| Strain | JC136 strain DSM 25383 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
724649 bp
Thymine Count
711172 bp
Guanine Count
1019996 bp
Cytosine Count
1032776 bp
Genome Length
3488964 bp
Protein-coding Genes
2681 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05444145_102369 | Not Available | Negative | 1111134 - 1111706 | 22141.7 |
| n terminal of calcineurin-like phosphoesterase | SAMN05444145_102370 | Not Available | Negative | 1111753 - 1113210 | 55579.5 |
| hypothetical protein | SAMN05444145_102371 | Not Available | Negative | 1113222 - 1115039 | 62058.1 |
| calcineurin-like phosphoesterase | SAMN05444145_102372 | Not Available | Negative | 1115064 - 1116593 | 57015.6 |
| putative binding domain-containing protein, n-terminal | SAMN05444145_102373 | Not Available | Negative | 1116662 - 1119748 | 104568.0 |
| starch-binding associating with outer membrane | SAMN05444145_102374 | Not Available | Negative | 1119764 - 1121266 | 57650.7 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05444145_102375 | Not Available | Negative | 1121285 - 1124905 | 131333.0 |
| fecr family protein | SAMN05444145_102376 | Not Available | Negative | 1124940 - 1125950 | 37987.3 |
| Trna-leu | Not Available | Not Available | Positive | 1126384 - 1126470 | Not Available |
| excinuclease abc subunit c | SAMN05444145_102378 | Not Available | Negative | 1126542 - 1128365 | 68670.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
