Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Rikenellaceae |
| Genus | Alistipes |
| Species | Alistipes timonensis |
| Strain | JC136 strain DSM 25383 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
724649 bp
Thymine Count
711172 bp
Guanine Count
1019996 bp
Cytosine Count
1032776 bp
Genome Length
3488964 bp
Protein-coding Genes
2681 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-linked outer membrane protein, susc/raga family | SAMN05444145_102309 | Not Available | Negative | 1037318 - 1040485 | 117899.0 |
| starch-binding associating with outer membrane | SAMN05444145_102310 | Not Available | Negative | 1040511 - 1042367 | 69800.6 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05444145_102311 | Not Available | Negative | 1042388 - 1045600 | 118988.0 |
| hypothetical protein | SAMN05444145_102312 | Not Available | Negative | 1045873 - 1046481 | 22056.5 |
| rna polymerase, sigma 54 subunit, rpon/sigl | SAMN05444145_102313 | Not Available | Negative | 1046721 - 1048142 | 55188.1 |
| asparaginyl-trna synthetase | SAMN05444145_102314 | Not Available | Negative | 1048369 - 1049757 | 52732.8 |
| beta-galactosidase | SAMN05444145_102315 | Not Available | Positive | 1050085 - 1051434 | 50602.9 |
| 23s rrna (pseudouridine1915-n3)-methyltransferase | SAMN05444145_102316 | Not Available | Positive | 1051438 - 1051911 | 17993.7 |
| regulatory protein, luxr family | SAMN05444145_102317 | Not Available | Positive | 1051911 - 1052486 | 21170.8 |
| outer membrane receptor proteins, mostly fe transport | SAMN05444145_102318 | Not Available | Positive | 1052563 - 1054827 | 84903.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
