Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Rikenellaceae |
| Genus | Alistipes |
| Species | Alistipes timonensis |
| Strain | JC136 strain DSM 25383 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
724649 bp
Thymine Count
711172 bp
Guanine Count
1019996 bp
Cytosine Count
1032776 bp
Genome Length
3488964 bp
Protein-coding Genes
2681 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| surface antigen variable number repeat-containing protein | SAMN05444145_102259 | Not Available | Positive | 965556 - 967391 | 69998.6 |
| tonb-dependent receptor plug domain | SAMN05444145_102260 | Not Available | Negative | 967469 - 969181 | 62466.1 |
| predicted transcriptional regulator | SAMN05444145_102261 | Not Available | Negative | 969184 - 969549 | 14137.7 |
| badf-type atpase | SAMN05444145_102262 | Not Available | Positive | 969814 - 970635 | 29528.2 |
| n-acetylmuramic acid 6-phosphate etherase | SAMN05444145_102263 | Not Available | Positive | 970625 - 971449 | 29736.7 |
| competence protein comea helix-hairpin-helix repeat region | SAMN05444145_102264 | Not Available | Positive | 971442 - 972497 | 39473.0 |
| small subunit ribosomal protein s21 | SAMN05444145_102265 | Not Available | Positive | 972591 - 972782 | 7757.56 |
| cupin domain-containing protein | SAMN05444145_102266 | Not Available | Negative | 972865 - 973206 | 12586.1 |
| pectate lyase, pela/pel-15e family | SAMN05444145_102267 | Not Available | Negative | 973206 - 974789 | 58489.9 |
| hypothetical protein | SAMN05444145_102268 | Not Available | Negative | 974795 - 976375 | 57186.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
