Alistipes timonensis JC136 strain DSM 25383

Gram-negativeanaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Rikenellaceae

Genus

Alistipes

Description

Alistipes timonensis strain JC136, designated as DSM 25383, is a Gram-negative bacterium characterized by its anaerobic nature, meaning it thrives in environments devoid of oxygen. This strain possesses flagella, which are tail-like structures that facilitate movement, allowing it to navigate through various substrates in its ecological niche. The genomic structure of A. timonensis includes a single replicon, indicating a streamlined genetic organization. This simplicity may contribute to its adaptability in anaerobic environments. The strain is cataloged under the accession number FNRI00000000.1, which provides a reference for researchers interested in its genetic and functional attributes. Biologically, A. timonensis is noteworthy as it belongs to a genus often associated with the human gut microbiota. Its anaerobic lifestyle suggests it may play a role in the fermentation processes within the intestines, contributing to the breakdown of complex carbohydrates and the production of short-chain fatty acids. These metabolic activities are critical for maintaining gut health and overall homeostasis in the host organism. Understanding the traits of A. timonensis can provide insights into the complex interactions within microbial communities, particularly those associated with human health and digestion.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyRikenellaceae
GenusAlistipes
SpeciesAlistipes timonensis
StrainJC136 strain DSM 25383

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Alistipes timonensis JC136 strain DSM 25383 genome assembly,

Gene Summary

Adenine Count

724649 bp

Thymine Count

711172 bp

Guanine Count

1019996 bp

Cytosine Count

1032776 bp

Genome Length

3488964 bp

Protein-coding Genes

2681 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
arabinose-5-phosphate isomeraseSAMN05444145_102249Not AvailableNegative949330 - 95029534403.1
2-dehydro-3-deoxyphosphooctonate aldolase (kdo 8-p synthase)SAMN05444145_102250Not AvailableNegative950296 - 95104226876.6
3-deoxy-manno-octulosonate cytidylyltransferase (cmp-kdo synthetase)SAMN05444145_102251Not AvailableNegative951050 - 95179627625.9
atp-dependent lon proteaseSAMN05444145_102252Not AvailableNegative951941 - 95437389980.7
valyl-trna synthetaseSAMN05444145_102253Not AvailablePositive954487 - 95711499487.7
rnase hiSAMN05444145_102254Not AvailablePositive957310 - 95777417184.4
atp-binding cassette, subfamily b, msbaSAMN05444145_102255Not AvailablePositive958073 - 95990268304.0
signal transduction histidine kinaseSAMN05444145_102256Not AvailablePositive959938 - 96142255655.3
isoleucyl-trna synthetaseSAMN05444145_102257Not AvailablePositive961511 - 964906128041.0
transcriptional regulator, trar/dksa familySAMN05444145_102258Not AvailablePositive964988 - 96536814413.3

Displaying genes 781 – 790 of 2757 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.