Alistipes timonensis JC136 strain DSM 25383

Gram-negativeanaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Rikenellaceae

Genus

Alistipes

Description

Alistipes timonensis strain JC136, designated as DSM 25383, is a Gram-negative bacterium characterized by its anaerobic nature, meaning it thrives in environments devoid of oxygen. This strain possesses flagella, which are tail-like structures that facilitate movement, allowing it to navigate through various substrates in its ecological niche. The genomic structure of A. timonensis includes a single replicon, indicating a streamlined genetic organization. This simplicity may contribute to its adaptability in anaerobic environments. The strain is cataloged under the accession number FNRI00000000.1, which provides a reference for researchers interested in its genetic and functional attributes. Biologically, A. timonensis is noteworthy as it belongs to a genus often associated with the human gut microbiota. Its anaerobic lifestyle suggests it may play a role in the fermentation processes within the intestines, contributing to the breakdown of complex carbohydrates and the production of short-chain fatty acids. These metabolic activities are critical for maintaining gut health and overall homeostasis in the host organism. Understanding the traits of A. timonensis can provide insights into the complex interactions within microbial communities, particularly those associated with human health and digestion.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyRikenellaceae
GenusAlistipes
SpeciesAlistipes timonensis
StrainJC136 strain DSM 25383

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Alistipes timonensis JC136 strain DSM 25383 genome assembly,

Gene Summary

Adenine Count

724649 bp

Thymine Count

711172 bp

Guanine Count

1019996 bp

Cytosine Count

1032776 bp

Genome Length

3488964 bp

Protein-coding Genes

2681 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
outer membrane protein omp28SAMN05444145_1015Not AvailableNegative7262 - 834138439.7
outer membrane protein omp28SAMN05444145_1016Not AvailableNegative8348 - 946339496.2
outer membrane protein omp28SAMN05444145_1017Not AvailableNegative9468 - 1057139417.0
hypothetical proteinSAMN05444145_1018Not AvailableNegative10588 - 1221360727.9
peroxiredoxinSAMN05444145_1019Not AvailableNegative12235 - 1272918106.8
susd family proteinSAMN05444145_10110Not AvailableNegative12831 - 1439959050.4
tonb-linked outer membrane protein, susc/raga familySAMN05444145_10111Not AvailableNegative14427 - 1704896453.8
hypothetical proteinSAMN05444145_10112Not AvailablePositive17723 - 1904246441.2
16s rrna (cytidine1402-2'-o)-methyltransferaseSAMN05444145_10113Not AvailablePositive19048 - 1975225974.2
tigr00341 family proteinSAMN05444145_10114Not AvailablePositive19774 - 2115951145.7

Displaying genes 41 – 50 of 2757 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.