Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Rikenellaceae |
| Genus | Alistipes |
| Species | Alistipes timonensis |
| Strain | JC136 strain DSM 25383 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
724649 bp
Thymine Count
711172 bp
Guanine Count
1019996 bp
Cytosine Count
1032776 bp
Genome Length
3488964 bp
Protein-coding Genes
2681 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative transport protein | SAMN05444145_101393 | Not Available | Positive | 492366 - 494030 | 59575.0 |
| aspartate/methionine/tyrosine aminotransferase | SAMN05444145_101394 | Not Available | Positive | 494136 - 495323 | 44433.5 |
| peptidoglycan/lps o-acetylase oafa/yrhl, contains acyltransferase and sgnh-hydrolase domains | SAMN05444145_101395 | Not Available | Negative | 495430 - 496593 | 43031.4 |
| peptidyl-prolyl cis-trans isomerase b (cyclophilin b) | SAMN05444145_101396 | Not Available | Negative | 496598 - 497038 | 15948.9 |
| peptidoglycan/lps o-acetylase oafa/yrhl, contains acyltransferase and sgnh-hydrolase domains | SAMN05444145_101397 | Not Available | Negative | 497060 - 498193 | 41655.5 |
| formate-dependent phosphoribosylglycinamide formyltransferase | SAMN05444145_101398 | Not Available | Negative | 498246 - 499415 | 42198.7 |
| lruc domain-containing protein | SAMN05444145_101399 | Not Available | Positive | 499667 - 501655 | 73501.6 |
| fucose 4-o-acetylase | SAMN05444145_101400 | Not Available | Negative | 501707 - 502657 | 36254.1 |
| Tmrna,resume consensus sequence (at 142): cttaatcgccggagccca | Not Available | Not Available | Positive | 502851 - 503252 | Not Available |
| pas domain s-box-containing protein | SAMN05444145_101402 | Not Available | Negative | 503378 - 506239 | 107316.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
